PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084886.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 155aa MW: 17549 Da PI: 8.2232

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127	8.7e-40	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l+++ e++red+++slvyeAe+r+rdPvyG++g i lq+++ +l+++l XP_011084886.1 13 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVGEDQREDTVNSLVYEAEVRLRDPVYGCIGAIALLQHRMVELQHDLI 107 6*******************************************************************************************998 PP DUF260 96 llke 99 l+++ XP_011084886.1 108 LARA 111 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.991	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-39	13	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MKSYQEQPRS SSSCAACKFL KRRCTPNCQF APYFRSDEPK KFAKVHKVFG ASNVSKILNE 60 VGEDQREDTV NSLVYEAEVR LRDPVYGCIG AIALLQHRMV ELQHDLILAR ARLASYVGHR 120 SLFLDDHGGS LMAPFLDIPE SNSLPSDQFG RFHFP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084886.1	1e-113	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	4e-58	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A068UZL3	8e-69	A0A068UZL3_COFCA; Uncharacterized protein
STRING	VIT_13s0067g01450.t01	7e-68	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-59	LOB domain-containing protein 21